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Table 1 Numbers of NGS reads, frequencies, and ranks for individual norovirus genotypes detected in sewage

From: Detection of human noroviruses in sewage by next generation sequencing in Shandong Province, 2019–2021

 

Total of NGS reads

Detection frequency

Genotype

No.

%

Rank

No.

%

Rank

GI.1

48,673,293

3.37

10

19

52.78

6

GI.2

65,409,138

4.53

9

18

50.00

8

GI.3

144,087,342

9.97

3

18

50.00

8

GI.4

33,840,162

2.34

12

9

25.00

13

GI.5

328,172,418

22.72

1

31

86.11

1

GI.6

31,962,514

2.21

14

8

22.22

14

GI.7

20,183

0.00

22

2

5.56

18

GI.8

41,428,898

2.87

11

12

33.33

11

GI.9

32,019,802

2.22

13

10

27.78

12

GII.1

11,454,074

0.79

16

3

8.33

17

GII.2

238,900,342

16.54

2

31

86.11

1

GII.3

84,714,461

5.86

6

19

52.78

6

GII.4

122,043,179

8.45

4

23

63.89

3

GII.5

295,341

0.02

21

1

2.78

21

GII.6

7,159,184

0.50

17

7

19.44

15

GII.8

466,293

0.03

20

2

5.56

18

GII.9

532,467

0.04

19

1

2.78

21

GII.10

14,578

0.00

23

2

5.56

18

GII.13

67,569,240

4.68

8

20

55.56

5

GII.14

2,973,269

0.21

18

1

2.78

21

GII.16

11,574,368

0.80

15

5

13.89

16

GII.17

95,801,649

6.63

5

21

58.33

4

GIX.1

75,562,844

5.23

7

17

47.22

10

Sum

1,444,675,039

100.00

–

–

–

–

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Virology Journal

ISSN: 1743-422X