Table 2 Classification of viral sequence at the family level for each cassava sample after ribodepletion
Sample | Total number of reads | Closteroviridae members* | Geminiviridae members* | Potyviridae members* | Total number of viral reads* |
|---|---|---|---|---|---|
Healthy vitroplant | 7,637,666 | 1 (0) | 9 (1) | 20 (3) | 30 (4) |
293MG040711 | 9,693,254 | 460 (47) | 2311 (239) | 0 (0) | 2771 (286) |
HAY 1.3 | 4,530,258 | 492 (109) | 111 (25) | 4673 (1032) | 5276 (1166) |
6 mois Blanc | 7,477,360 | 22 (3) | 290 (39) | 5 (1) | 317 (43) |
CRE11 | 11,705,482 | 48 (4) | 93 (8) | 1 (0) | 142 (12) |
HEL 3.1 | 4,456,320 | 0 (0) | 12 (3) | 8 (2) | 20 (5) |